PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.072940.1
Common NameCsa_2G423590, LOC101212433
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 239aa    MW: 26862.6 Da    PI: 7.35
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.072940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-1179128355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++  rE++RRd++N++f eL  +l +    + +K +K++iL  A++ + +Lq
  Cucsa.072940.1  79 TSKACREKQRRDKLNERFLELAAVLEPG---KPPKSDKVAILSDAIRMMTDLQ 128
                     67889**********************9...99***************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.9776127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1379149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-979128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-879132No hitNo description
SuperFamilySSF474592.49E-1381151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-982133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDNPPPNWNW LFDYSTVDDL AVVDPRFSPP QSISFSWSNP SINFLSKDSL EVDCSYEDLD  60
STKEVGRKRL RGETSAASTS KACREKQRRD KLNERFLELA AVLEPGKPPK SDKVAILSDA  120
IRMMTDLQCE TQKLRESKED LKAKIKELKV EKNELRDEKQ RLRAEKEKLE LQIRAVNTRA  180
ADVQHPPPTL SAAFTAQGQS AGNKLMPFIG YPGIAMWQFL PPAAVDISQD HVLRPPVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571GRKRLRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819161e-136LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBankLN7132651e-136LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151873.11e-176PREDICTED: transcription factor ILR3
SwissprotQ9FH379e-83ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0A0LQH81e-176A0A0A0LQH8_CUCSA; Uncharacterized protein
STRINGVIT_12s0059g02650.t011e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16023486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-84bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]